Publications
Journal Papers Conference Papers Theses Book Chapters
Preprints
 A.H. Ahmed, Y. Mohsin, R. Zhao, Y. Yang, M. Salerno, P. Nagpal, M. Jacob, Freebreathing and ungated cardiac cine using navigatorless spiral SToRM
 A. Pramanik, H. K. Aggarwal, M. Jacob, Deep Generalization of Structured Low Rank Algorithms (DeepSLR)
 H. K. Aggarwal, M. Jacob, JMoDL: Joint ModelBased Deep Learning for Optimized Sampling and Reconstruction
Journal Papers
 Q. Zou, S. Poddar, M. Jacob, Sampling of Planar Curves: Theory and Fast Algorithms, IEEE Transactions on Signal Processing, in press
 M. Jacob, M. Mani, J.C. Ye, Structured LowRank Algorithms, Theory, MR Applications, and Links to Machine Learning, IEEE Signal Processing Magazine, in press.
 M.Jacob, J.C.Ye, M. Doneva, L. Ying, Computational MRI: Compressive Sensing and Beyond, IEEE Signal Processing Magazine, Editorial, Jan 2020.
 M. Mani, H. Aggarwal, V. Magnotta, M. Jacob, Improved MUSSELS reconstruction for highresolution multishot diffusion weighted imaging, Magnetic Resonance in Medicine, in press
 H.K. Aggarwal, M. Mani, M. Jacob, MoDLMUSSELS: ModelBased Deep Learning for MultiShot Sensitivity Encoded Diffusion MRI, IEEE Transactions on Medical Imaging, in press
 S. Poddar, M. Jacob, Clustering of Data with Missing Entries using Nonconvex Fusion Penalties, IEEE Transactions on Signal Processing, in press.
 Y. Hu, X. Li, Y. Gu, M. Jacob, Hyperspectral Image Recovery using Nonconvex Sparsity and LowRank Regularizations, IEEE Transactions on Geoscience and Remote Sensing, in press.
 M.Mani, M. Jacob, G. McKinnon, B. Yang, B. Rutt, V. Magnotta, SMS MUSSELS: A Navigatorfree Reconstruction for Simultaneous Multislice Accelerated Multishot Diffusion Weighted Imaging, Magnetic Resonance in Medicine, in press.
 J. Humston, I. Bhattacharya, M. Jacob, and C. Cheatum,. Optimized Reconstructions of Compressively Sampled TwoDimensional Infrared Spectra, Journal of Chemical Physics, in press.
 A. Joy, M. Jacob, J. Paul, Directionality Guided NonLinear Diffusion Compressed Sensing MR Image Reconstruction, Magnetic Resonance in Medicine, in press.
 R. Zhou, Y. Yang, R.C. Mathew, J.M. Mugler, D.S. Weller, C.M. Kramer, A.H.A. Ahmed, M. Jacob, M. Salerno, Free Breathing Cine Imaging with MotionCorrected Reconstruction at 3T Using SPiral Acquisition with Respiratory correction and Cardiac Selfgating (SPARCS), Magnetic Resonance in Medicine, in press.
 S. Biswas, H. Aggarwal, M. Jacob, Dynamic MRI using modelbased deep learning and SToRM priors: MoDLSToRM, Magnetic Resonance in Medicine, 2019.
 Y. Hu, X. Liu, M. Jacob, A Generalized Structured LowRank Matrix Completion Algorithm for MR Image Recovery, IEEE Transactions on Medical Imaging, in press.
 Y. Mohsin, S. Poddar, M. Jacob, Freebreathing & ungated cardiac MRI using iterative SToRM (iSToRM), IEEE Transactions on Medical Imaging, in press.
 S. Poddar, Y. Mohsin, A. Deidra, B. Thattayilath, R. Ashwath, M. Jacob, Manifold recovery using kernel lowrank regularization: application to dynamic imaging, IEEE Transactions on Computational Imaging, in press.
 A. Balachandrasekaran, M. Mani, M. Jacob, Calibrationfree B0 correction of EPI data using structured low rank matrix recovery, IEEE Transactions on Medical Imaging, in press.
 H.K. Aggarwal, M.P. Mani, M. Jacob, MoDL: Model Based Deep Learning Architecture for Inverse Problems, IEEE Transactions on Medical Imaging,Vol. 38, No. 2, February 2019.
 R.H. Blair, E.Eichen, M. Jacob, D. Gotz, Bootstrapping estimates of stability for clusters, observations and model selection, Computational Statistics, 2019.
 M. Mani, V. Magnotta, M. Jacob, A General Algorithm for Compensation of Trajectory Errors: Application to Radial Imaging, Magnetic Resonance in Medicine, in press, 2018
 G. Ongie, S. Biswas, M. Jacob, Convex recovery of continuous domain piecewise constant images from nonuniform Fourier samples, IEEE Transactions on Signal Processing, Jan 2018, pp 236  250.
 I. Bhattacharya, J. Humston, C. Cheatum, M. Jacob, Acceleratating twodimensional infrared spectroscopy while preserving lineshapes using GIRAF, Optics Letters, Nov 2017,45734576.
 A. Balachandrasekaran, V. Magnotta, M. Jacob, Recovery of damped exponentials using structured low rank matrix completion, IEEE Transactions on Medical Imaging, July 2017, pp. 2087  2098
 Ongie, M. Jacob, GIRAF: A Fast Algorithm for Structured LowRank Matrix Recovery, IEEE Transactions on Computational Imaging, Dec 2017, pp. 535  550.

C. Chen, A. Shah, X. Wu, M. Jacob, A Rapid 3D fatwater decomposition method using GlObally Optimal Surface Estimation (RGOOSE), Magnetic Resonance in Medicine, July 2017, pp 24012407.

I. Bhattacharya, M. Jacob, Compartmentalized lowrank recovery for high resolution lipid unsuppressed MRSI, Magnetic Resonance in Medicine, Oct 2017, pp 12671280.

M. Mani, M. Jacob, D. Kelley, V. Magnotta, Multishot sensitivity encoded diffusion data recovery using structured low rank matrix completion (MUSSELS), Magnetic Resonance in Medicine, Volume 78, Issue 2,2017 pp 494–507.

J. Humston, I. Bhattacharya, M. Jacob, C. Cheatum, Compressively Sampled TwoDimensional Infrared Spectroscopy That Preserves Lineshape Information, Journal of Physical Chemistry A, 2017, 121 (16), pp 3088–3093.

S. Biswas, S. Dasgupta, R. Mudumbai, M. Jacob, Subspace aware recovery of lowrank and jointly sparse signals, IEEE Transactions on Computational Imaging,Volume: 3, Issue: 1, March 2017, pp 2235

H. Achanta, S. Biswas, S. Dasgupta, B. Dasgupta, M. Jacob, R. Mudumbai, The Spark of Fourier Matrices: Connections to Vanishing Sums and Coprimeness, Digital Signal Processing, Volume 61, February 2017, Pages 76–85.
 Y. Mohsin, S.G Lingala, E. DiBella, M.Jacob, Accelerated dynamic MRI Using Patch Regularization for Implicit motion CompEnsation (PRICE), Magnetic Resonance in Medicine,77:1238–1248, 2017. [Software]
 C. Liao, C. Ying, X. Cao, C. Song, H. He, M. Mani, M. Jacob, V. Magnotta, J. Zhong, Efficient Parallel Reconstruction for High Resolution Multi shot Spiral Diffusion Data with Low Rank Constraints, Magnetic Resonance in Medicine, 2017 Mar;77(3):13591366

G. Ongie, M. Jacob, OfftheGrid Recovery of Piecewise Constant Images from Few Fourier Samples, SIAM Journal on Imaging Sciences, 2016, pp. 1004–1041.
 S. Bhave, S.G Lingala, J. Newell, S. Nagle, M.Jacob, Blind Compressed Sensing Enables 3D Dynamic Free Breathing MR Imaging of Lung Volumes and Diaphragm Motion, Investigative Radiology, 2016 Jun;51(6):38799
 S. Poddar, M.Jacob, Dynamic MRI using Smoothness Regularization on Manifolds (SToRM), IEEE Transactions on Medical Imaging, vol 35, no 4, April 2016.
 S. Bhave, S.G. Lingala, C.P. Johnson, V.A. Magnotta, M. Jacob, "Accelerated wholebrain multiparameter mapping using blind compressed sensing, Magnetic Resonance in Medicine, 2016 Mar;75(3):117586
 S. Biswas, H. Achanta, M. Jacob, S. Dasgupta, R. Mudumbai, Recovery of Low Rank and Jointly Sparse Matrices with Two Sampling Matrices, IEEE Signal Processing Letters, 22 (11), pp 1945  1949, 2015.
 G. Ongie, M. Jacob, Recovery of discontinuous signals using group sparse higher degree total variation, IEEE Signal Processing Letters, 22 (9), pp 1414  1418, 2015.
 Y. Mohsin, G. Ongie, M. Jacob, Iterative shrinkage algorithm for patch smoothness regularized medical image recovery, IEEE Trans. Medical Imaging, 34(12), pp 241728, 2015.
 S.G. Lingala, E. DiBella, M. Jacob, Deformation corrected compressed sensing (DCCS): a novel framework for accelerated dynamic MRI, IEEE Transactions on Medical Imaging, 34(1):7285, 2015. (supplementary videos)
 M. Mani, M. Jacob, V. Magnotta, J. Zhong, Fast iterative algorithm for the reconstruction of multishot nonCartesian diffusion data, Magnetic Resonance in Medicine, 74 (4), pp 1086–1094, 2015.
 M. Mani, M. Jacob, A. Guidon, V. Magnotta, J. Zhong, Acceleration of high angular and spatial resolution diffusion imaging using compressed sensing with multichannel spiral data, Magnetic Resonance in Medicine, 73, pp 126–138, 2015.
 C. Cui, X. Wu, J. Newell, M. Jacob, Fat water decomposition using GlObally Optimal Surface Estimation (GOOSE) algorithm, Magnetic Resonance in Medicine, Volume 73, Issue 3, pages 1289–1299, 2015. [software] (ISMRM challenge: team name KongfuPanda)
 Y. Hu, G. Ongie, M. Jacob, Generalized Higher Degree Total Variation (HDTV) Regularization, IEEE Transactions on Image Processing, vol 23 (6), pp 24232435, 2014. [software]
 Z. Yang, M. Jacob, Mean square optimal NUFFT approximation for efficient nonCartesian MRI reconstruction , Journal of Magnetic Resonance, vol 242, pp 126135, May 2014. [software]
 A. Daducci,E. Rodrıguez, M. Descoteaux, E. Garyfallidis, Y. Gur, Y. Lin, M. Mani, S. Merlet, M. Paquette, A. Manzanares, M. Reisert, P. Rodrigues, F. Sepehrband, E. Caruyer, J. Choupan, R. Deriche, M. Jacob, G. Menegaz, V. Prckovska, M. Rivera, Y. Wiaux, J. Thiran, Quantitative comparison of reconstruction methods for intravoxel fiber recovery from diffusion MRI, IEEE Transactions on Medical Imaging, vol 33 (2), 384399, 2014.
 S. Bhave, R. Eslami, M. Jacob,"A sparse spectral deconvolution algorithm for nonCartesian MRSI", Magnetic Resonance in Medicine, pages 469–476, Feb 2014
 S. G. Lingala, M. Jacob, Blind Compressed Sensing Dynamic MRI", IEEE Transactions on Medical Imaging, pp 11321145, vol.32(6), June 2013. [software]
 S. G. Lingala, E.DiBella, G. Adluru, C. McGann,M. Jacob, Accelerating free breathing myocardial perfusion MRI using multi coil radial kt SLR, Physics in Biology and Medicine, vol.58(20), pp. 73097327, Sep 2013. (link to supplementary material). [software]
 Z. Yang, M. Jacob,"Nonlocal regularization of inverse problems: a unified variational framework", IEEE Trans. Image Processing, pp: 3192203, vol.22(8), Aug 2013.
 Y. Hu, M. Jacob,"Higher degree total variation (HDTV) regularization for image recovery", IEEE Trans. Image Processing, pp 25592571, Vol 21, No 5, May 2012. [software]
 Y. Hu, S. G. Lingala, M. Jacob, "A fast majorizeminimize algorithm for the recovery of sparse and low rank matrices", IEEE Trans. Image Processing, pp 742753, Vol 21, No 2, Feb 2012.
 S. G. Lingala, Y. Hu, E. DiBella, M. Jacob, "Accelerated dynamic MRI exploiting sparsity and lowrank structure", IEEE Trans. Medical Imaging, pg 10421054, vol 30, May 2011. [software]
 K. Satyananda, M. Jacob,"Noniterative regularized reconstruction algorithm for nonCartesian MRI", Magnetic Resonance Imaging, Feb 2011.
 R. Eslami, M. Jacob, "Robust Reconstruction of MRSI Data Using a Sparse Spectral Model and High Resolution MRI Priors", IEEE Transactions on Medical Imaging, June 2010, vol 29, issue 6, pp 1297309
 Y. Lin, T. Gu, C. Zhong, S. Kennedy, M. Jacob, J. Zhong, "Highresolution MRS in the presence of field inhomogeneity via intermolecular doublequantum coherences on a 3T wholebody scanner", Magnetic Resonance in Medicine, Jan 2010.
 M. Jacob, "Optimized least square non uniform fast Fourier transform (OLSNUFFT)" , IEEE Transactions of Signal Processing, vol. 57, issue 6, pp. 21652177, Feb 2009
 R. Frazin, M. Jacob, M. Wakin, H. Morgan, "Toward reconstruction of coronal mass ejection density from only three points of view", Astrophysical Journal, April 2009, pp 636641.
 M. Jacob, B. Sutton, "Algebraic decomposition of water and fat in MRI", IEEE Transactions of Medical Imaging, Feb 2009, pp 17384.
 M. Jacob, X. Zhu, A. Ebel, N.Schuff, and Z.P. Liang, "Improved modelbased magnetic resonance spectroscopic imaging", IEEE Transactions of Medical Imaging, Oct 2007, 130518.
 I. Khalidov,D. Van De Ville,M.Jacob, F. Lazeyras, M. Unser, "BSLIM: Spectral localization by imaging with explicit B0 field inhomogeneity compensation", IEEE Transactions on Medical Imaging, Feb 2007, 9901000.
 N. Cao, A. Neharoi, M.Jacob, "Image reconstruction for diffuse optical tomography using sparsity regularization and expectationmaximization algorithm", Optics Express,2007,pp 1369513708
 M. Jacob, Y. Bresler, V. Toronov, X. Zhang, and A. Webb, "A levelset algorithm for the reconstruction of functional activation in nearinfrared spectroscopic imaging", Journal of Biomedical Optics, Dec 2006, 064029.
 A. Amzallag, C. Vaillant, M.Jacob, M. Unser, J.Bednar, JD. Kahn, J.Dubochet, A. Stasiak, JH. Maddocks, "3D reconstruction and comparison of shapes of DNA minicircles observed by cryoelectron microscopy,Nucleic Acids Res, Sept. 2006.
 M. Jacob, T.Blu, C.Vaillant,J.Maddocks and M. Unser, "3D shape estimation of DNA from stereo cryoelectron micrographs using a projectionsteerable snake", IEEE Transactions on Image Processing, 21427, Jan 2006.
 M. Jacob, M. Unser, "Design of steerable filters for feature detection using Cannylike criterion", IEEE Transactions on Pattern Analysis and Machine Intelligence, vol. 26, no. 8, pp. 10071019, Aug. 2004.
 E.Meijering, M. Jacob, J. C. F. Sarria, P. Steiner, H. Hirling and M. Unser, "Design and validation of a tool for neurite tracing and analysis in fluorescence microscopy", Cytometry, vol. 58A, no. 2, pp. 167176, April 2004.
 M. Jacob, T. Blu, M. Unser, "Efficient energies and algorithms for parametric snakes", IEEE Transactions on Image Processing, vol. 13, no. 9, pp. 12311244, Sep. 2004.
 M. Jacob, T. Blu, M. Unser, "Sampling of Periodic Signals: A Quantitative Error Analysis", IEEE Transactions on Signal Processing, vol. 50, no. 5, pp. 11531159, May 2002.
 M. Jacob, T. Blu, M. Unser, "An Exact Method for Computing the Area Moments of Wavelet and Spline Curves, IEEE Transactions on Pattern Analysis and Machine Intelligence", vol. 23, no. 6, pp. 633642, June 2001.
Conference Papers

A. H. Ahmed, H. K. Aggarwal, P. nagpal, M. Jacob, Dynamic MRI using Deep Manifold SelfLearning, IEEE ISBI 2020

M. Mani, S. Ghosh, H. K. Aggarwal, M. Jacob, ModelBased Deep Learning for Reconstruction of Joint KQ Undersampled high resolution diffusion MRI, IEEE ISBI 2020

H.K. Aggarwal, M. Jacob, Joint Optimization of Sampling Pattern and Priors in ModelBased Deep Learning, IEEE ISBI 2020

A. Pramanik, H. K. Aggarwal, M. Jacob, Calibrationless Parallel MRI using ModelBased Deep Learning (CMODL), IEEE ISBI 2020

A. Pramanik, H. K. Aggarwal, M. Jacob, Offthegrid ModelBased Deep Learning (OMODL), ISBI 2019

H.K. Aggarwal, M. P. Mani, M. Jacob, MultiShot SensitivityEncoded Diffusion MRI using ModelBased Deep Learning (MODLMUSSELS), ISBI 2019
 Y. Mohsin, S. Poddar, B. Thattayilath, D. Ansah, and M. Jacob, Navigatorless manifold recovery of cardiac data using iterative SToRM, ISMRMESMRMB Conference, Paris, France 2018.

S. Poddar, M.Jacob, Recovery of Noisy Points on Bandlimited Surfaces: Kernel Methods Reexplained, ICASSP 2018

S. Poddar, M. Jacob, Clustering of Data with Missing Entries, ICASSP 2018.

S. Biswas, H.K. Aggarwal, S. Poddar, and M. Jacob, Modelbased freebreathing cardiac MRI reconstruction using deep learned & STORM priors: MoDLSTORM, ICASSP 2018.

S. Poddar, M. Jacob, Recovery of Point Clouds on Surfaces: Application to Image Reconstruction, ISBI 2018.

Y. Hu, X. Liu, M. Jacob, Adaptive structured lowrank algorithm for MR image recovery, ISBI 2018.

H.K. Aggarwal, M. Mani, and M. Jacob, Model Based Image Reconstruction using Deep Learned Priors (MoDL), ISBI 2018.

I. Bhattacharya, M. Jacob, Denoising and Deinterleaving of EPSI Data using Structured lowRank Matrix Recovery, ISBI 2018

H.K. Aggarwal, M. Mani, and M. Jacob, MoDL: Model based Deep Learning Architecture for Image Recovery with Prior Information, ISMRM 2018

Yasir Mohsin , Sunrita Poddar , Bijoy Thattaliyath , Ansah Diedra, Xiaoming B , Dingxin Wang and Mathews Jacob, Calibrationfree manifold recovery for free breathing & ungated Cardiac MR Imaging, ISMRM workshop 2017, New York City, NY, USA.

A. Parekh, S. Poddar, X. Bi, D. Wang, M. Jacob, Freebreathing and Ungated cine MRI using joint smoothness regularization on image and patch manifolds, ISMRM 2017, Honolulu, USA.

I. Bhattacharya, R. Noeske, B. Yang, R. Schulte, M. Jacob, High Resolution MRSI using compartmental low rank algorithm: demonstration using undersampled EPSI, Proc. ISMRM 2017, Honolulu, USA.

M. Mani , S. Poddar , V. Magnotta, M. Jacob, Trajectory Correction of Radial Data Using MUSSELS, Proc. ISMRM, 2017.

C. Cui, A. Shah, X. Wu, M. Jacob, A novel method for Rapid 3D fat and water decomposition using a GlObally Optimal multisurface Estimation (RGOOSE), ISMRM 2017, Honolulu, USA.

M. Mani , A. Guidon , B. Yang , V. Magnotta, M. Jacob, SelfCalibrated NonCartesian Multishot Diffusion Imaging, Proc. ISMRM, 2017.

M. Mani , M. Jacob , B. Yang , V. Magnotta, Comprehensive Correction of Motion and Nyquist Ghost Artifacts for Multishot Diffusion Imaging, Proc. ISMRM, 2017.

S.Poddar, X.Bi, D.Wang, M.Jacob, A Calibrationless approach to freebreathing ungated cardiac MRI, Proc. ISMRM 2017, Honolulu, USA.

M. Mani , M. Jacob , B. Yang , V. Magnotta, High Resolution Multishot Diffusion Imaging at 7T without Navigators, Proc. ISMRM, 2017.

A. Balachandrasekaran, M. Jacob, Novel annihilation filter framework for accelerated parameter mapping, Proc. ISMRM 2017, Honolulu, Hawaii.

M. Mani , M. Jacob , B. Yang , V. Magnotta, Comparison of MUSSELS vs MUSE for MultiShot Diffusion Imaging, Proc. ISMRM, 2017.

A. Balachandrasekaran, G. Ongie and M. Jacob, Continuous domain compressed sensing (CDCS): application to accelerated dynamic MRI, ISMRM 2017, Honolulu, Hawaii.
 A. Balachandrasekaran, M. Jacob, Novel Structured Lowrank algorithm to recover spatially smooth exponential image time series, IEEE ISBI, Melbourne, Australia, 2017.
 C. Cushing, I. Bhattacharya, R. Noeske, W. Kearney, B. Yang, M. Jacob, V. Magnotta, Comparison of Undersampling Schemes for invivo COSY and jresolved Spectroscopy at 7T, 58th Experimental Nuclear Magnetic Resonance Conference, Asilomar Conference Grounds, Pacific Grove, California.
 M. Mani, V. Magnotta, D. Kelley, M.Jacob, Comprehensive reconstruction of multishot multichannel diffusion MRI data using MUSSELS, Engineering in Biology and Medicine Conference, 2016.
 G. Ongie, S. Biswas, M. Jacob, Structured matrix recovery of piecewise constant signals with performance guarantees, International Conference on Image Processing, 2016.
 A. Balachandrasekaran, G. Ongie, M. Jacob, Accelerated dynamic MRI using structured matrix completion, International Conference on Image Processing, 2016.
 S. Poddar, M. Jacob, Convex clustering and recovery of partially observed data, International Conference on Image Processing, 2016.
 Y. Hu, M. Jacob, Multiple degree total variation for image restoration, International Conference on Image Processing, 2016
 M. Mani, V. Magnotta, D. Kelley, M. Jacob, Comprehensive reconstruction of multishot multichannel diffusion data using MUSSELS, Annual Conference of IEEE Engineering in Biology and Medicine Society (EMBC), 2016.
 I. Bhattacharya, M. Jacob, Lowrank based compartmentalized reconstruction algorithm for high resolution MRSI without lipid suppression methods, International Society for Magnetic Resonance in Medicine (ISMRM), Singapore, May 2016.
 S Bhave, S Lingala, J Newell, S Nagle, M Jacob, "Clinical Evaluation of Respiratory Mechanics using accelerated dynamic 3D free breathing MRI reconstruction". International Society for Magnetic Resonance in Medicine (ISMRM), Singapore, May 2016.
 H Heo, S Bhave, M Jacob, J Zhou, "Blind Compressed sensing based ultrafast Chemical Exhcange Saturation Transfer (CEST) Imaging", International Society for Magnetic Resonance in Medicine (ISMRM), Singapore, May 2016.
 M. Mani, M. Jacob, D. Kelley, V. Magnotta. Undersampled multishot diffusion data recovery using total variation regularized structured lowrank matrix completion (TVMUSSELS). IInternational Society for Magnetic Resonance in Medicine; 2016.
 M. Mani, M. Jacob, D. Kelley, V. Magnotta. Multishot sensitivity encoded diffusion data recovery using structured lowrank matrix completion (MUSSELS), International Society for Magnetic Resonance in Medicine; 2016.
 C. Chen, A. Shah, X. Wu, C. Cushing, V. Magnotta. A Fast and Globally Optimal 3D Graph Search Algorithm for Phase Unwrapping in MRI with Applications in Quantitative Susceptibility Mapping (QSM), International Society for Magnetic Resonance in Medicine; 2016.
 I. Bhattacharya, M. Jacob, Compartmentalized lowrank regularization with orthogonality constraints for high resolution MRSI, ISBI, Prague, Czech Republic, 2016.
 I. Bhattacharya, M. Jacob, Fast Data Acquisition and Reconstruction Methods for lipid unsuppressed Metabolic imaging, ISMRM workshop on Data Sampling and Image Reconstruction, Sedona, Arizona, Jan 2016.
 G. Ongie, M. Jacob, A fast algorithm for stuctured low rank matrix recovery with applications to undersampled MRI reconstruction, ISBI, Prague, Czech Republic, 2016.
 S.G. Lingala, Y.Mohsin, S. Bhave, X.Miao, Y.Guo, K.S. Nayak, E. DiBella, M. Jacob, "Dataadaptive reconstruction algorithms for accelerated dynamic MRI: an opensource MATLAB package." ISMRM workshop on Data Sampling and Image Reconstruction, Sedona, Arizona,Jan 2016.
 S. Biswas, S. Dasgupta, M. Jacob, R. Mudumbai, Spark under 2 D Fourier Sampling, EUSIPCO, Nice, France, 2015.
 G. Ongie, M. Jacob, Recovery of piecewise smooth images from few Fourier samples, Sampling Theory and Applications (SampTA), Washington D.C., 2015.
 Y. Mohsin, S.G. Lingala,E Dibella, M Jacob, Motion compensated free breathing myocardial perfusion MRI using iterative nonlocal shrinkage, ISMRM, Toronto, Canada, 2015
 S. Bhave, S.G. Lingala, A Comellas, J Newell, M Jacob, Dynamic 3D MRI of the whole lung using constrained reconstruction with learned dictionaries, ISMRM, Toronto, Canada, 2015
 S. Bhave, S.G. Lingala, C.P. Johnson, V.A. Magnotta, M. Jacob, Whole brain multiparameter mapping using dictionary learning, ISMRM Toronto Canada, 2015.
 I.Bhattacharya, M.Jacob, High Resolution 1H MRSI Without Lipid Suppression at short echo times using variable density spirals, ISMRM, Toronto, Canada, 2015.
 S.Poddar, J.Newell, M.Jacob, Free breathing CINE with Low Rank aided Manifold smoothness Regularization, ISMRM, Toronto, Canada, 2015.
 M. Mani, M. Jacob, V. Magnotta, Diffusion Imaging Of Head And Neck At High Angular And Spatial Resolution Using MultiShot Spirals, ISMRM, Toronto, Canada, 2015.
 G. Ongie, M. Jacob, Superresolution MRI using finite rate of innovation curves, IEEE ISBI, New York City, USA, 2015.
 A. Balachandrasekaran, M. Jacob, Accelerated dynamic MRI using self expressiveness prior, IEEE ISBI, New York City, USA, 2015.
 S. Poddar, M. Jacob, Low rank recovery with manifold smoothness prior: theory and application to accelerated MRI, IEEE ISBI, New York City, USA, 2015.
 S. Biswas, S. Poddar, S. Dasgupta, R. Mudumbai, M. Jacob, Two step recovery of jointly sparse and lowrank matrices: theoretical guarantees, IEEE ISBI 2015, in press
 H.K. Achanta, S. Dasgupta, M. Jacob, B.N. Dasgupta, R. Mudumbai, Coprime conditions for Fourier Sampling for Sparse recovery, A Coruna, Spain, 2014.
 S. Biswas, S. Poddar, S. Dasgupta, R. Mudumbai, M. Jacob, Subspace based low rank and joint sparse matrix recovery, Asilomar, Pacific Grove, USA, 2014
 S. Bhave, S. G. Lingala, M. Jacob, A variable splitting based algortihm for Fast Multicoil Blind Compressed sensing MRI Reconstruction, EMBC, Chicago, USA, 2014.
 Y. Mohsin, G. Ongie, M.Jacob, "Accelerated MRI using iterative nonlocal shrinkage", EMBC, Chicago, USA, 2014.
 Y. Mohsin, Z. Yang, S.G.Lingala, M.Jacob, "Motion compensated dynamic imaging without explicit motion estimation", ISMRM, Milan, Italy, 2014.
 M. Mani, M. Jacob, V. Magnotta, M.Jacob, "Fast motion compensated ODF reconstruction from undersampled multichannel nonCartesian MRI diffusion imaging data ", ISMRM, Milan, Italy, 2014.
 C. Cui, X. Wu, J. Newell, M. Jacob, "3D GlObally Optimal Surface Estimation (3DGOOSE) algorithm for fat and water separation", ISMRM, Milan, Italy, 2014.
 S.Poddar, S.G.Lingala, M.Jacob, "Real Time Cardiac MRI using Manifold Sensing", ISMRM, Milan, Italy, 2014.
 S.G. Lingala, Y.Mohsin, J.Newell, J.Sieren, D.Wang, D.Thedens, M.Jacob, "Towards 3D dynamic MRI of the lung using blind compressed sensing", ISMRM, Milan, Italy, 2014.
 S. Poddar, S.G. Lingala, M. Jacob, "Joint recovery of undersampled signals on a manifold: application to free breathing MRI", ICASSP, Florence, Italy, 2014.

G. Ongie, Y. Hu, M. Jacob, Higher Degree Total Variation for 3D Image Recovery, ISBI 2014, China.

S. Bhave, Jinsuh Kim, C. P. Johnson, M. Jacob, Accelerated CEST MRI using Compressive Sensing and Multishot Spiral Acquisitions, ISMRM, Salt Lake city, Utah, April 2013
 S. G. Lingala, E.DiBella, M. Jacob, Accelerated myocardial perfusion MRI using motion compensated compressed sensing (MCCS), ISMRM, Salt lake city, Utah, April 2013.
 S. G. Lingala, M. Jacob, Blind compressed sensing with sparse dictionaries for accelerated dynamic MRI, IEEE ISBI, San Francisco, April 2013.
 S. G. Lingala, M. Jacob, A blind compressed sensing framework for dynamic MRI, IEEE ISBI, Barcelona, May 2012
 Y. Hu, M. Jacob Improved higher degree total variation regularization, IEEE ISBI, Barcelona, May 2012
 Z. Yang, M. Jacob Robust nonlocal regularization framework for motion compensated dynamic imaging without explicit motion estmation, IEEE ISBI, Barcelona, May 2012
 M. Mani, M. Jacob, A. Guidon, C. Liu, A. Song, V. Magnotta, J. Zhong Acceleration of high angular and spatial resolution diffusion imaging using compressive sensing, IEEE ISBI, Barcelona, May 2012
 M. Mani, M. Jacob, A. Guidon, V. Magnotta, J.Zhong, Accelerating nonCartesian SENSE for large coil arrays, application to motion compensation in multishot DWI, IEEE ISBI, Barcelona, May 2012
 R.Eslami, M. Jacob, "A sparse reconstruction algorithm for parallel spiral MR spectroscopic imaging", IEEE ISBI, Chicago, April 2011.
 S.G. Lingala, Y. Hu, E. DiBella, M. Jacob,"Accelerated first pass cardiac perfusion MRI using improved kt SLR", IEEE ISBI, Chicago, April 2011.
 Z.Yang, M. Jacob,"A unified energy minimization framework for nonlocal regularization", IEEE ISBI, Chicago", April 2011.
 S.G. Lingala, M. Nadar, C. Chefd'hotel, Li Zhang, M. Jacob,"Unified reconstruction and motion estimation in cardiac perfusion MRI", IEEE ISBI, Chicago, April 2011.
 Y. Hu, M. Jacob,"Image recovery using improved total variation regularization", IEEE ISBI, Chicago, April 2011.
 S.G. Lingala, Y. Hu, M. Jacob,"Realtime cardiac MRI using lowrank and sparsity penalties", IEEE ISBI, Rotterdam", April 2010.
 K. Satyananda, M. Jacob,"A fast & accurate noniterative algorithm for regularized nonCartesian MRI, IEEE ISBI, Rotterdam", April 2010.
 R. Eslami, M. Jacob,"Spatial Spectral Modeling for Robust MRSI, IEEE EMBS, Minneapolis", Sept 2009.
 R. Eslami, M. Jacob, "Reduction of distortions in MRSI using a new signal model", IEEE international symposium on biomedical imaging, 2009.
 Z. Yang, M. Jacob, "Efficient NUFFT algorithm for nonCartesian MRI reconstruction",, IEEE international symposium on biomedical imaging, 2009.
 M. Jacob, "Optimized nonuniform fast Fourier transform (NUFFT) for iterative tomographic reconstruction", IEEE International Conference on Acoustics, Speech, and Signal Processing (ICASSP) 2009.
 R. Eslami, M. Jacob, "Correction of B0 inhomogeneity distortion in magnetic resonance spectroscopic imaging", IEEE International Conference on Acoustics, Speech, and Signal Processing (ICASSP) 2009.
 M.Jacob, H. Lehoullier, S. Bora, S. McAleavey, D. Dalecki, J. McDonough,"The use of speckle tracking for the recovery of displacement and velocity information from sequences of ultrasound images of the tongue", International Seminar on Speech Production, Proceedings of ISSP 2008.
 R.Shankar, T. Gu, J. Zhong, M. Jacob,""Improved IDQC reconstruction for inhomogeneity corrected MR spectroscopy", IEEE International Symposium on Biomedical Imaging, Proceedings of ISBI 2008.
 M. Jacob, B. Sutton,"Noniterative decomposition of fat and water", IEEE International Symposium on Biomedical Imaging, Proceedings of ISBI 2007.
 R. Morrisson, M. Jacob, M. Do, "Multichannel estimation of coil sensitivities in parallel MRI", IEEE International Symposium on Biomedical Imaging, Proceedings of ISBI 2007
 M. Jacob, B. Sutton, "Noniterative decomposition of fat and water using chemical shift",Proceedings of the ISMRM, 2007, in press
 M. Jacob, V. Toronov, A. Webb and Y. Bresler, "A new levelset algorithm for the diffuse optical imaging of the brain", Proceedings of the SPIE: Photonics West (2006)
 M. Jacob, B. Sutton, J. Haldar, Z.P. Liang, "On Model Based Spectroscopic Imaging", Proceedings of the IEEE International Symposium on Biomedical Imaging (ISBI'06).
 M. Jacob, V. Toronov, Y. Bresler, X. Zhang, A. Webb, "Reconstruction of functional activations in diffuse optical imaging", Proceedings of the ISBI 2006.
 J. Haldar, M. Jacob, A. Ebel, X. Zhu, N. Schuff, B. Sutton, Z.P. Liang, "Regularized inversion of noisy, incomplete MR spectroscopic imaging data with anatomical prior",Proceedings of the IEEE International Symposium on Biomedical Imaging, 2006
 M. Jacob, B. Sutton, J. Haldar, Z.P. Liang, "Improved spectroscopic imaging using echoplanar scans and sparse reconstruction", Proceedings of the ISMRM, 2006.
 J. Haldar, M. Jacob, A. Ebel, X. Zhu, N. Schuff, B. Sutton, Z.P. Liang, "Constrained spectroscopic imaging with hard and soft anatomical boundary constraints", Proceedings of the ISMRM, 2006.
 I. Khalidov, D. Van De Ville, M.Jacob, F. Lazeyras, M. Unser, "Improved MRSI with Field Inhomogeneity Compensation," Proceedings of the SPIE: International Symposium on Medical Imaging: Image Processing, 2006.
 F. Aguet, M. Jacob, M. Unser,"ThreeDimensional Feature Detection Using Optimal Steerable Filters", Proceedings of the 2005 IEEE International Conference on Image Processing (ICIP'05), Genova, Italy, September 1114, 2005, pp. II1158II1161 .
 D. Xu, M. Jacob, Z. P. Liang,"Optimal sampling of kspace on Cartesian grids for parallel imaging", Proceedings of ISMRM 2005, Miami, Florida
 D. Xu, L. Ying, M. Jacob, Z. P. Liang,"Optimizing SENSE for Dynamic Imaging", Proceedings of ISMRM 2005, Miami, Florida.
 M. Jacob, T. Deller, X.Zhu, Z. P.Liang,"Highresolution spectroscopic imaging using a deformable spatial spectral model", Proceedings of ISMRM 2005,
 M. Jacob, D. Xu, Z.P. Liang,"Optimal Selection of Phase Encodings in Parallel MR Imaging", Second International Workshop on Parallel MRI, ETH Zurich, Switzerland, 1517 October 2004
 M. Jacob, T. Blu, M. Unser,"Shape estimation of 3D DNA molecules from stereo cryoelectron micrographs", Accepted for publication at Proceedings of the International Conference on Image Processing, Singapore, October 2004.
 E. Meijering, M. Jacob, JC. F.Sarria, M. Unser,"Neurite Tracing in Fluorescence Microscopy Images using Ridge Filtering and Graph Searching: Principles and Validation", Proceedings of ISBI, 2004, pp. 12191222.
 E. Meijering, M. Jacob, JC. F.Sarria, M. Unser,"A Novel Approach for Neurite Tracing and Analysis in Fluorescence Microscopy Images", Proceedings of the Fifth IASTED International Conference on Signal and Image Processing, August 1315, 2003, Honolulu, USA , pp. 491495.
 M. Jacob, M. Unser,"Optimal steerable filters for feature detection", Proceedings of the International Conference on Image Processing 2003, September 1417.
 M. Jacob, T. Blu, M. Unser,,"3D reconstruction of DNA filaments from stereo cryoelectron micrographs ", Proceedings of the First 2002 ISBI 2002, vol.II, pp. 597600.
 M. Feilner, M. Jacob, M. Unser,"Orthogonal Quincunx Wavelets with Fractional Orders ", Proceedings of the 2001 IEEE International Conference on Image Processing, October 710, 2001, vol. I, pp. 606609.
 M. Jacob, T. Blu, M. Unser,"A Unifying Approach and Interface for SplineBased Snakes ", Proceedings of the SPIE International Symposium on Medical Imaging: Image Processing, February 1722, 2001, vol. 4322, Part I, pp. 340347.
 M. Jacob, T. Blu, M. Unser,"An Error Analysis for the Sampling of Periodic Signals", Proceedings of the Fourth International Conference on Sampling Theory and Applications (SampTA'01), 2001, pp. 4548.
 M. Jacob, T. Blu, M. Unser,"Exact Computation of Area Moments for Spline and Wavelet Curves",Proceedings of the Fifteenth International Conference on Pattern Recognition (ICPR'00), Barcelona, Spain, September 38, 2000, vol. III, pp. 131134.
PhD Theses
 S. Poddar, Ph.D Thesis, Joint recovery of high dimensional signals from noisy and undersampled measurements using fusion penalties, Department of Electrical and Compuer Engineering, University of Iowa, 2018.
 I. Bhattacharya, Pushing the limits of spectroscopic imaging using lowrank based reconstruction, Ph.D Thesis, Department of Electrical and Compuer Engineering, University of Iowa, 2018.
 C. Chen, MRI fatwater separation using graph search based methods, Ph.D Thesis, Department of Electrical and Compuer Engineering, University of Iowa, 2016.
 G. Ongie, Off the grid compressive sensing, Ph.D Thesis, Applied Mathematical and Computational Sciences, University of Iowa, 2016. Recipient of the D.C.Spriestersbach Dissertation Prize, University of Iowa, 2018
 Sampada Bhave, Novel dictionary learning algorithm for accelerating multidimensional MRI applications, Ph.D Thesis, Department of Electrical and Compuer Engineering, University of Iowa, 2016.
 Sajan Goud, Novel adaptive reconstruction schemes for accelerated myocardial perfusion magnetic resonance imaging, Ph.D Thesis, Department of Biomedical Engineering, University of Iowa, 2014. Recipient of the Rex Montgomery Dissertation Prize, University of Iowa, 2015
 Zhili Yang, Accelerated MRI using nonlocal regularization , Department of Electrical and Computer Engineering, University of Rochester, 2014
 Yue Hu, Novel Compressed Sensing Algorithms with Applications to Magnetic Resonance Imaging, Department of Electrical and Computer Engineering, University of Rochester, 2013
M.S Theses
 Xuan Zhou, A fast algorithm for general matrix factorization, M.S. Thesis, Department of Electrical and Compuer Engineering, University of Iowa, 2013.
 Kashyap, Satyananda, A fast and accurate algorithm for regularized reconstruction of nonCartesian MRI, M.S thesis, Department of Electrical and Compuer Engineering, University of Rochester, 2010.
 Souabh Bora, Speckle tracking for recovery of displacement and velocity information from sequences of ultrasound images of the tongue M.S thesis, Department of Electrical and Compuer Engineering, University of Rochester, 2009.